PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024259-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 440aa    MW: 48654.7 Da    PI: 5.9747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024259-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09248295455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00024259-RA 248 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 295
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.05E-10242299No hitNo description
SuperFamilySSF474594.19E-17242313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17244311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6248295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MNRALPEMLH CLSGPGNGTD MTVLERQRTR VKWQHQEQQN YFGGSEFVGV FLEPSQAGQV  60
GDFQDLLGGG GGSVLRDVMT RSVKPDPGLE NGWPELGRYE LPDLGFGSAV LMNGSPTGFE  120
MNPTITRTSS CPPAEAQVAP EAKGKVSEPT EKMSSAVGRE SFKKRKADKV QNTKVVSEDD  180
AKDKRSKVCA EEGESKITTE QTRTKNTSTH TNNRETSADT SRENSKASEV QKPDYIHVRA  240
RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AGMLDEIINY VQSLQRQVEF  300
LSMKLATVNP RLDFNIEDLF AKEIFPACSA NFPTIGSSSE MTNPAYLQFN PVQQMVACCG  360
LEMGVNTPDL MALRRTISAP VSLPETYFDT PCFTQLHPPL TWDADLQNLF NLDSHQGRSI  420
SFPSQPFTGS NEASNLKMEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236908.10.0PREDICTED: transcription factor bHLH63
RefseqXP_010088933.10.0hypothetical protein L484_018560
TrEMBLW9QH030.0W9QH03_9R
STRINGVIT_03s0038g04760.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-66cryptochrome-interacting basic-helix-loop-helix 1