PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00024259-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 440aa MW: 48654.7 Da PI: 5.9747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00024259-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	248	295	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq WALNUT_00024259-RA 248 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 295 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.05E-10	242	299	No hit	No description
SuperFamily	SSF47459	4.19E-17	242	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.624	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	244	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	248	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-10	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MNRALPEMLH CLSGPGNGTD MTVLERQRTR VKWQHQEQQN YFGGSEFVGV FLEPSQAGQV 60 GDFQDLLGGG GGSVLRDVMT RSVKPDPGLE NGWPELGRYE LPDLGFGSAV LMNGSPTGFE 120 MNPTITRTSS CPPAEAQVAP EAKGKVSEPT EKMSSAVGRE SFKKRKADKV QNTKVVSEDD 180 AKDKRSKVCA EEGESKITTE QTRTKNTSTH TNNRETSADT SRENSKASEV QKPDYIHVRA 240 RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AGMLDEIINY VQSLQRQVEF 300 LSMKLATVNP RLDFNIEDLF AKEIFPACSA NFPTIGSSSE MTNPAYLQFN PVQQMVACCG 360 LEMGVNTPDL MALRRTISAP VSLPETYFDT PCFTQLHPPL TWDADLQNLF NLDSHQGRSI 420 SFPSQPFTGS NEASNLKMEI

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MNRALPEMLH CLSGPGNGTD MTVLERQRTR VKWQHQEQQN YFGGSEFVGV FLEPSQAGQV  60
GDFQDLLGGG GGSVLRDVMT RSVKPDPGLE NGWPELGRYE LPDLGFGSAV LMNGSPTGFE  120
MNPTITRTSS CPPAEAQVAP EAKGKVSEPT EKMSSAVGRE SFKKRKADKV QNTKVVSEDD  180
AKDKRSKVCA EEGESKITTE QTRTKNTSTH TNNRETSADT SRENSKASEV QKPDYIHVRA  240
RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AGMLDEIINY VQSLQRQVEF  300
LSMKLATVNP RLDFNIEDLF AKEIFPACSA NFPTIGSSSE MTNPAYLQFN PVQQMVACCG  360
LEMGVNTPDL MALRRTISAP VSLPETYFDT PCFTQLHPPL TWDADLQNLF NLDSHQGRSI  420
SFPSQPFTGS NEASNLKMEI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008236908.1	0.0	PREDICTED: transcription factor bHLH63
Refseq	XP_010088933.1	0.0	hypothetical protein L484_018560
TrEMBL	W9QH03	0.0	W9QH03_9R
STRING	VIT_03s0038g04760.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3618	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-66	cryptochrome-interacting basic-helix-loop-helix 1